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I tried to build the conda in docker using R 3.6.1 and the same blas packages. Unfortunately, linux 0.3.7 libopenblas package (build h6e990d7_0) reproduced the error continuously. Any advice on this matter?

Thank you in advance

msnset.nrm <- normalise(data, "quantiles")
Error in preprocessCore::normalize.quantiles(exprs(object), ...) : 
  ERROR; return code from pthread_create() is 22

R version 3.6.1 (2019-07-05)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: macOS Mojave 10.14.4

Matrix products: default
BLAS/LAPACK: /Users/MH/miniconda3/envs/snakemake_all/lib/libopenblasp-r0.3.7.dylib

Random number generation:
RNG:     Mersenne-Twister
Normal:  Inversion
Sample:  Rounding

locale:
[1] C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

loaded via a namespace (and not attached):
[1] compiler_3.6.1

libblas                   3.8.0               12_openblas    conda-forge
libcblas                  3.8.0               12_openblas    conda-forge
liblapack                 3.8.0               12_openblas    conda-forge
libopenblas               0.3.7                hd44dcd8_1    conda-forge

Problem: I created a conda environment in a Docker repository to run a snakemake pipeline. I used the same running conda environment file running on my mac (R 3.6.1). Everything runs smoothly till it ...

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Answer 1

, I think you can fix it by downgrading to 0.3.3. So when you create your conda environment you should do something likeNow, whether downgrading will break other things, I've no idea libopenblas问题：我在Docker仓库中创建了一个conda环境来运行snakemake管道。我使用同样的conda环境文件在我的Mac上运行（R 3.6.1）。一切都运行得很顺利，直到使用MSnbase包进行规范化时才失败，我在MSnbaSe库中得到以下错误。

conda create -n my-env libopenblas=0.3.3 other-packages

在网上查了一下，好像是openblas的问题。在我的Mac上（在那里它运行得很好），sessionInfo()显示了以下内容。libopenblas和conda列表