在Ubuntu中安装cellranger软件

Question

export PATH=/opt/cellranger-3.1.0:$PATH
vim ~/.bashrc
export PATH="~/opt/cellranger-3.1.0:$PATH"

These codes work.

我想在Ubuntu中安装cellranger。

提前感谢您的帮助！

最佳，

Yue

https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/installation](https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/installation

export PATH = / opt / cellranger-3.1.0：$ PATHvim〜/ .bashrcexport PATH =“〜/ opt / cellranger-3.1.0：$ PATH”

Answer 1

据我了解，它已经安装。只需按照他们的描述运行以下命令，并检查输出是否与他们的相同。之后，您可以开始使用cellranger。

$ cellranger testrun --id=tiny

输出必须如下：

cellranger testrun 3.1.0
Copyright (c) 2016 10x Genomics, Inc.  All rights reserved.
-----------------------------------------------------------------------------
Martian Runtime - v3.2.3
 
Running preflight checks (please wait)...
2016-11-14 09:57:51 [runtime] (ready)           ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS
2016-11-14 09:57:54 [runtime] (split_complete)  ID.tiny.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS
...
 
Pipestance completed successfully!