在将R软件包安装到solaris服务器时，出现以下错误：
“ / R-3.6.1 / R-3.6.1 / include”存在于我们的服务器中，在安装软件包时，某些脚本在内部执行并寻找"I/R-3.6.1/R-3.6.1/include"，但找不到。
I"/R-3.6.1/R-3.6.1/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -KPIC -c api.cpp -o api.o
sh: I/R-3.6.1/R-3.6.1/include: not found
make: Fatal error: Command failed for target `Rcpp.so'
ERROR: compilation failed for package 'Rcpp'
全install.packages()输出：
installing *source* package 'Rcpp' ...
** package 'Rcpp' successfully unpacked and MD5 sums checked
** using staged installation
** libs
I"/R-3.6.1/R-3.6.1/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -KPIC -c api.cpp -o api.o
sh: I/R-3.6.1/R-3.6.1/include: not found
*** Error code 127 (ignored)
I"/R-3.6.1/R-3.6.1/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -KPIC -c attributes.cpp -o attributes.o
sh: I/R-3.6.1/R-3.6.1/include: not found
*** Error code 127 (ignored)
I"/R-3.6.1/R-3.6.1/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -KPIC -c barrier.cpp -o barrier.o
sh: I/R-3.6.1/R-3.6.1/include: not found
*** Error code 127 (ignored)
I"/R-3.6.1/R-3.6.1/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -KPIC -c date.cpp -o date.o
sh: I/R-3.6.1/R-3.6.1/include: not found
*** Error code 127 (ignored)
I"/R-3.6.1/R-3.6.1/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -KPIC -c module.cpp -o module.o
sh: I/R-3.6.1/R-3.6.1/include: not found
*** Error code 127 (ignored)
I"/R-3.6.1/R-3.6.1/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -KPIC -c rcpp_init.cpp -o rcpp_init.o
sh: I/R-3.6.1/R-3.6.1/include: not found
*** Error code 127 (ignored)
-shared -L/usr/local/lib -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o
sh: line 2: -shared: not found
*** Error code 127
The following command caused the error:
if test "zapi.o attributes.o barrier.o date.o module.o rcpp_init.o" != "z"; then \
echo -shared -L/usr/local/lib -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o ; \
-shared -L/usr/local/lib -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o ; \
fi
make: Fatal error: Command failed for target `Rcpp.so'
ERROR: compilation failed for package 'Rcpp'
* removing '/R-3.6.1/R-3.6.1/library/Rcpp'
makeconf条目如下：（我们更改了CXX，CXX11，CXX14）
enter code here
# etc/Makeconf. Generated from Makeconf.in by configure.
#
# ${R_HOME}/etc/Makeconf
#
# R was configured using the following call
# (not including env. vars and site configuration)
# configure
## This fails if it contains spaces, or if it is quoted
include $(R_SHARE_DIR)/make/vars.mk
AR = ar
BLAS_LIBS = -L"$(R_HOME)/lib$(R_ARCH)" -lRblas
C_VISIBILITY = -fvisibility=hidden
CC = gcc -std=gnu99
CFLAGS = -g -O2 $(LTO)
CPICFLAGS = -fPIC
CPPFLAGS = -I/usr/local/include
CXX = /opt/csw/gcc4/bin
CXXCPP = /lib/cpp
CXXFLAGS = $(LTO)
CXXPICFLAGS = -KPIC
CXX98 =
CXX98FLAGS = $(LTO)
CXX98PICFLAGS =
CXX98STD =
CXX11 = /opt/csw/gcc4/bin
CXX11FLAGS = $(LTO)
CXX11PICFLAGS =
CXX11STD =
CXX14 = /opt/csw/gcc4/bin
CXX14FLAGS = $(LTO)
CXX14PICFLAGS =
CXX14STD =
CXX17 =
CXX17FLAGS = $(LTO)
CXX17PICFLAGS =
CXX17STD =
CXX_VISIBILITY =
DYLIB_EXT = .so
DYLIB_LD = $(CC)
DYLIB_LDFLAGS = -shared -fopenmp# $(CFLAGS) $(CPICFLAGS)
DYLIB_LINK = $(DYLIB_LD) $(DYLIB_LDFLAGS) $(LDFLAGS)
ECHO = echo
ECHO_C = \c
ECHO_N =
ECHO_T =
F_VISIBILITY = -fvisibility=hidden
## FC is the compiler used for all Fortran as from R 3.6.0
FC = gfortran
FCFLAGS = -g -O2 $(LTO)
## additional libs needed when linking with $(FC), e.g. on some Oracle compilers
FCLIBS_XTRA =
FFLAGS = -g -O2 $(LTO)
FLIBS = -lgfortran -lm -R/opt/csw/lib
FPICFLAGS = -fPIC
FOUNDATION_CPPFLAGS =
FOUNDATION_LIBS =
JAR =
JAVA = /usr/bin/java
JAVAC =
JAVAH =
## JAVA_HOME might be used in the next three.
## They are for packages 'JavaGD' and 'rJava'
JAVA_HOME = /usr/jdk/instances/jdk1.8.0/jre
JAVA_CPPFLAGS =
JAVA_LIBS =
JAVA_LD_LIBRARY_PATH =
LAPACK_LIBS = -L"$(R_HOME)/lib$(R_ARCH)" -lRlapack
LDFLAGS = -L/usr/local/lib
## we only need this is if it is external, as otherwise link to R
LIBINTL=
LIBM = -lm
LIBR0 =
LIBR1 =
LIBR =
LIBS = -lpcre -llzma -lbz2 -lz -lnsl -lsocket -lrt -lsunmath -ldl -lm -liconv -licuuc -licui18n
## needed by R CMD config
LIBnn = lib
LIBTOOL = $(SHELL) "$(R_HOME)/bin/libtool"
LTO =
## needed to build applications linking to static libR
MAIN_LD = $(CC)
MAIN_LDFLAGS = -fopenmp
MAIN_LINK = $(MAIN_LD) $(MAIN_LDFLAGS) $(LDFLAGS)
MKINSTALLDIRS = "$(R_HOME)/bin/mkinstalldirs"
OBJC =
OBJCFLAGS = $(LTO)
OBJC_LIBS =
OBJCXX =
R_ARCH =
RANLIB = ranlib
SAFE_FFLAGS = -g -O2
SED = /usr/xpg4/bin/sed
SHELL = /bin/sh
SHLIB_CFLAGS =
SHLIB_CXXFLAGS =
SHLIB_CXXLD = $(CXX)
SHLIB_CXXLDFLAGS = -shared
SHLIB_CXX98LD = $(CXX98) $(CXX98STD)
SHLIB_CXX98LDFLAGS = -shared
SHLIB_CXX11LD = $(CXX11) $(CXX11STD)
SHLIB_CXX11LDFLAGS = -shared
SHLIB_CXX14LD = $(CXX14) $(CXX14STD)
SHLIB_CXX14LDFLAGS = -shared
SHLIB_CXX17LD = $(CXX17) $(CXX17STD)
SHLIB_CXX17LDFLAGS = -shared
SHLIB_EXT = .so
SHLIB_FFLAGS =
SHLIB_LD = $(CC)
SHLIB_LDFLAGS = -shared# $(CFLAGS) $(CPICFLAGS)
SHLIB_LIBADD =
## We want to ensure libR is picked up from $(R_HOME)/lib
## before e.g. /usr/local/lib if a version is already installed.
SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LIBR0) $(LDFLAGS)
SHLIB_OPENMP_CFLAGS = -fopenmp
SHLIB_OPENMP_CXXFLAGS =
SHLIB_OPENMP_FFLAGS = -fopenmp
STRIP_STATIC_LIB =
STRIP_SHARED_LIB =
TCLTK_CPPFLAGS = -I/usr/include
TCLTK_LIBS =
YACC = yacc
## Legacy settings: no longer used by R as of 3.6.0
## Setting FC often sets F77 (on Solaris make even if set)
## so must follow FC in this file.
F77 = gfortran
FCPICFLAGS = -fPIC
F77_VISIBILITY = -fvisibility=hidden
SHLIB_FCLD = $(FC)
SHLIB_FCLDFLAGS = -shared
SHLIB_OPENMP_FCFLAGS = -fopenmp
## for linking to libR.a
STATIC_LIBR = # "$(R_HOME)/lib$(R_ARCH)/libR.a" $(BLAS_LIBS) $(FLIBS) $(LIBINTL) -lreadline -lncurses $(LIBS)
## These are recorded as macros for legacy use in packages
## set on AIX, formerly for old glibc (-D__NO_MATH_INLINES)
R_XTRA_CFLAGS =
## was formerly set on HP-UX
R_XTRA_CPPFLAGS = -I"$(R_INCLUDE_DIR)" -DNDEBUG
## currently unset
R_XTRA_CXXFLAGS =
## used for gfortran in R > 3.6.0
R_XTRA_FFLAGS =
## SHLIB_CFLAGS SHLIB_CXXFLAGS SHLIB_FFLAGS are apparently currently unused
## SHLIB_CXXFLAGS is undocumented, there is no SHLIB_FCFLAGS
ALL_CFLAGS = $(PKG_CFLAGS) $(CPICFLAGS) $(SHLIB_CFLAGS) $(CFLAGS)
ALL_CPPFLAGS = -I"$(R_INCLUDE_DIR)" -DNDEBUG $(PKG_CPPFLAGS) $(CLINK_CPPFLAGS) $(CPPFLAGS)
ALL_CXXFLAGS = $(PKG_CXXFLAGS) $(CXXPICFLAGS) $(SHLIB_CXXFLAGS) $(CXXFLAGS)
ALL_OBJCFLAGS = $(PKG_OBJCFLAGS) $(CPICFLAGS) $(SHLIB_CFLAGS) $(OBJCFLAGS)
ALL_OBJCXXFLAGS = $(PKG_OBJCXXFLAGS) $(CXXPICFLAGS) $(SHLIB_CXXFLAGS) $(OBJCXXFLAGS)
ALL_FFLAGS = $(PKG_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(FFLAGS)
## can be overridden by R CMD SHLIB
P_FCFLAGS = $(PKG_FFLAGS)
ALL_FCFLAGS = $(P_FCFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(FCFLAGS)
## LIBR here as a couple of packages use this without SHLIB_LINK
ALL_LIBS = $(PKG_LIBS) $(SHLIB_LIBADD) $(LIBR)# $(LIBINTL)
.SUFFIXES:
.SUFFIXES: .c .cc .cpp .d .f .f90 .f95 .m .mm .M .o
.c.o:
$(CC) $(ALL_CPPFLAGS) $(ALL_CFLAGS) -c $< -o $@
.c.d:
@echo "making $@ from $<"
@$(CC) -MM $(ALL_CPPFLAGS) $< > $@
.m.d:
@echo > $@
.cc.o:
$(CXX) $(ALL_CPPFLAGS) $(ALL_CXXFLAGS) -c $< -o $@
.cpp.o:
$(CXX) $(ALL_CPPFLAGS) $(ALL_CXXFLAGS) -c $< -o $@
.cc.d:
@echo > $@
.cpp.d:
@echo > $@
.m.o:
$(OBJC) $(ALL_CPPFLAGS) $(ALL_OBJCFLAGS) -c $< -o $@
.mm.o:
$(OBJCXX) $(ALL_CPPFLAGS) $(ALL_OBJCXXFLAGS) -c $< -o $@
.M.o:
$(OBJCXX) $(ALL_CPPFLAGS) $(ALL_OBJCXXFLAGS) -c $< -o $@
.f.o:
$(FC) $(ALL_FFLAGS) -c $< -o $@
## @FCFLAGS_f9x@ are flags needed to recognise the extensions
.f95.o:
$(FC) $(ALL_FCFLAGS) -c $< -o $@
.f90.o:
$(FC) $(ALL_FCFLAGS) -c $< -o $@
让我们看一下已发布的Makeconf文件的某些部分：
CC = gcc -std=gnu99
CFLAGS = -g -O2 $(LTO)
CPICFLAGS = -fPIC
CPPFLAGS = -I/usr/local/include
处理C的这一部分看起来不错。
CXX = /opt/csw/gcc4/bin
CXXCPP = /lib/cpp
CXXFLAGS = $(LTO)
CXXPICFLAGS = -KPIC
CXX的值必须是C ++编译器的可执行文件，如果不在$PATH中，则可以选择完整路径。例如，我有
CXX = g++ -std=gnu++11
（（注意，C ++ 11是当今的默认值。）
对于CXXFLAGS，您应该添加优化。一个好的起点可能是
CXXFLAGS = -g -O2 $(LTO)
最后CXXPICFLAGS对于您的编译器是错误的。 -fpic应该可以。
假设所有C ++版本都使用相同的编译器，则CXXnn*变量很简单：
CXXnn获取编译器（没有任何其他标志）CXXnnFLAGS和CXXnnPICFLAGS与CXXFLAGS和CXXPICFLAGS]相同>CXXnnSTD获取激活该特定标准所需的编译器标志，例如CXX98STD = -std=gnu++98或CXX11STD = -std=gnu++11