调用z时发生错误:org.apache.spark.api.python.PythonRDD.collectAndServe

问题描述 投票:0回答:1

我是新手,在将.csv文件转换为数据帧时遇到错误。我正在使用pyspark_csv模块进行转换,但是给出了错误,这里是错误的堆栈跟踪,可以任何一个给我建议解决此错误

---------------------------------------------------------------------------
Py4JJavaError                             Traceback (most recent call last)
<ipython-input-16-67fe725a8e27> in <module>()
----> 1 data_df = pycsv.csvToDataFrame(sqlCtx, data_body, sep=",", columns=data_header.split('\t')).cache()

/usr/spark-1.5.0/python/pyspark_csv.py in csvToDataFrame(sqlCtx, rdd, columns, sep, parseDate)
     51         rdd_sql = rdd_array.zipWithIndex().filter(
     52             lambda r_i: r_i[1] > 0).keys()
---> 53     column_types = evaluateType(rdd_sql, parseDate)
     54 
     55     def toSqlRow(row):

/usr/spark-1.5.0/python/pyspark_csv.py in evaluateType(rdd_sql, parseDate)
    177 def evaluateType(rdd_sql, parseDate):
    178     if parseDate:
--> 179         return rdd_sql.map(getRowType).reduce(reduceTypes)
    180     else:
    181         return rdd_sql.map(getRowTypeNoDate).reduce(reduceTypes)

/usr/spark-1.5.0/python/pyspark/rdd.py in reduce(self, f)
    797             yield reduce(f, iterator, initial)
    798 
--> 799         vals = self.mapPartitions(func).collect()
    800         if vals:
    801             return reduce(f, vals)

/usr/spark-1.5.0/python/pyspark/rdd.py in collect(self)
    771         """
    772         with SCCallSiteSync(self.context) as css:
--> 773             port = self.ctx._jvm.PythonRDD.collectAndServe(self._jrdd.rdd())
    774         return list(_load_from_socket(port, self._jrdd_deserializer))
    775 

/usr/spark-1.5.0/python/lib/py4j-0.8.2.1-src.zip/py4j/java_gateway.py in __call__(self, *args)
    536         answer = self.gateway_client.send_command(command)
    537         return_value = get_return_value(answer, self.gateway_client,
--> 538                 self.target_id, self.name)
    539 
    540         for temp_arg in temp_args:

/usr/spark-1.5.0/python/lib/py4j-0.8.2.1-src.zip/py4j/protocol.py in get_return_value(answer, gateway_client, target_id, name)
    298                 raise Py4JJavaError(
    299                     'An error occurred while calling {0}{1}{2}.\n'.
--> 300                     format(target_id, '.', name), value)
    301             else:
    302                 raise Py4JError(

Py4JJavaError: An error occurred while calling z:org.apache.spark.api.python.PythonRDD.collectAndServe.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 0 in stage 10.0 failed 1 times, most recent failure: Lost task 0.0 in stage 10.0 (TID 20, localhost): org.apache.spark.api.python.PythonException: Traceback (most recent call last):
  File "/usr/spark-1.5.0/python/lib/pyspark.zip/pyspark/worker.py", line 111, in main
    process()
  File "/usr/spark-1.5.0/python/lib/pyspark.zip/pyspark/worker.py", line 106, in process
    serializer.dump_stream(func(split_index, iterator), outfile)
  File "/usr/spark-1.5.0/python/lib/pyspark.zip/pyspark/serializers.py", line 263, in dump_stream
    vs = list(itertools.islice(iterator, batch))
  File "/usr/spark-1.5.0/python/pyspark/rdd.py", line 797, in func
    yield reduce(f, iterator, initial)
  File "/tmp/spark-d85b88bf-e4a4-46b8-8b51-eaf0f03e48ab/userFiles-40f9eb34-4efa-4ffb-aaf5-ebcb24a4ecb9/pyspark_csv.py", line 160, in reduceTypes
    b_type = b[col]
IndexError: list index out of range

	at org.apache.spark.api.python.PythonRDD$$anon$1.read(PythonRDD.scala:138)
	at org.apache.spark.api.python.PythonRDD$$anon$1.<init>(PythonRDD.scala:179)
	at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:97)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:297)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
	at org.apache.spark.scheduler.Task.run(Task.scala:88)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
	at java.lang.Thread.run(Thread.java:745)

Driver stacktrace:
	at org.apache.spark.scheduler.DAGScheduler.org$apache$spark$scheduler$DAGScheduler$$failJobAndIndependentStages(DAGScheduler.scala:1280)
	at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1268)
	at org.apache.spark.scheduler.DAGScheduler$$anonfun$abortStage$1.apply(DAGScheduler.scala:1267)
	at scala.collection.mutable.ResizableArray$class.foreach(ResizableArray.scala:59)
	at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:47)
	at org.apache.spark.scheduler.DAGScheduler.abortStage(DAGScheduler.scala:1267)
	at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:697)
	at org.apache.spark.scheduler.DAGScheduler$$anonfun$handleTaskSetFailed$1.apply(DAGScheduler.scala:697)
	at scala.Option.foreach(Option.scala:236)
	at org.apache.spark.scheduler.DAGScheduler.handleTaskSetFailed(DAGScheduler.scala:697)
	at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.doOnReceive(DAGScheduler.scala:1493)
	at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1455)
	at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onReceive(DAGScheduler.scala:1444)
	at org.apache.spark.util.EventLoop$$anon$1.run(EventLoop.scala:48)
	at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:567)
	at org.apache.spark.SparkContext.runJob(SparkContext.scala:1813)
	at org.apache.spark.SparkContext.runJob(SparkContext.scala:1826)
	at org.apache.spark.SparkContext.runJob(SparkContext.scala:1839)
	at org.apache.spark.SparkContext.runJob(SparkContext.scala:1910)
	at org.apache.spark.rdd.RDD$$anonfun$collect$1.apply(RDD.scala:905)
	at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:147)
	at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:108)
	at org.apache.spark.rdd.RDD.withScope(RDD.scala:306)
	at org.apache.spark.rdd.RDD.collect(RDD.scala:904)
	at org.apache.spark.api.python.PythonRDD$.collectAndServe(PythonRDD.scala:373)
	at org.apache.spark.api.python.PythonRDD.collectAndServe(PythonRDD.scala)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:606)
	at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:231)
	at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:379)
	at py4j.Gateway.invoke(Gateway.java:259)
	at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:133)
	at py4j.commands.CallCommand.execute(CallCommand.java:79)
	at py4j.GatewayConnection.run(GatewayConnection.java:207)
	at java.lang.Thread.run(Thread.java:745)
Caused by: org.apache.spark.api.python.PythonException: Traceback (most recent call last):
  File "/usr/spark-1.5.0/python/lib/pyspark.zip/pyspark/worker.py", line 111, in main
    process()
  File "/usr/spark-1.5.0/python/lib/pyspark.zip/pyspark/worker.py", line 106, in process
    serializer.dump_stream(func(split_index, iterator), outfile)
  File "/usr/spark-1.5.0/python/lib/pyspark.zip/pyspark/serializers.py", line 263, in dump_stream
    vs = list(itertools.islice(iterator, batch))
  File "/usr/spark-1.5.0/python/pyspark/rdd.py", line 797, in func
    yield reduce(f, iterator, initial)
  File "/tmp/spark-d85b88bf-e4a4-46b8-8b51-eaf0f03e48ab/userFiles-40f9eb34-4efa-4ffb-aaf5-ebcb24a4ecb9/pyspark_csv.py", line 160, in reduceTypes
    b_type = b[col]
IndexError: list index out of range

	at org.apache.spark.api.python.PythonRDD$$anon$1.read(PythonRDD.scala:138)
	at org.apache.spark.api.python.PythonRDD$$anon$1.<init>(PythonRDD.scala:179)
	at org.apache.spark.api.python.PythonRDD.compute(PythonRDD.scala:97)
	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:297)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:264)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:66)
	at org.apache.spark.scheduler.Task.run(Task.scala:88)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:214)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
	... 1 more

这是我的代码,最后声明它在从csv转换为dataframe时发出此错误

import findspark
findspark.init()
findspark.find()
import pyspark   
sc=pyspark.SparkContext(appName="myAppName")
sqlCtx = pyspark.SQLContext

#csv to dataframe

sc.addPyFile('/usr/spark-1.5.0/python/pyspark_csv.py')

import pyspark_csv as pycsv


def skip_header(idx, iterator):
    if(idx == 0):
        next(iterator)
    return iterator

data=sc.textFile('gdeltdata/20160427.CSV')

data_header = data.first()

data_body = data.mapPartitionsWithIndex(skip_header)

data_df = pycsv.csvToDataFrame(sqlCtx, data_body, sep=",", columns=data_header.split('\t'))
python-3.x apache-spark pyspark spark-dataframe
1个回答
0
投票

我实际上无法发表评论,但是,如果没有任何代码,我将不得不猜测您正在尝试引用一个在存在的字符串上不存在的索引 - 这与执行以下操作相同:

string = 'hello' new_char = string[6]

这会尝试在5个字母的字符串上找到第7个字母 - 这会带来以下错误:

IndexError: string index out of range

由于我没有看到导致该错误的代码,所以我能够提供有关您的问题的全部内容。

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