当我尝试卸载软件包时会发生以下情况：
(soothsayer_py3.8_env) jespinozlt2-osx:Prototype jespinoz$ pip uninstall soothsayer
Found existing installation: soothsayer 2020.5.1
Uninstalling soothsayer-2020.5.1:
Would remove:
/Users/jespinoz/anaconda3/envs/soothsayer_py3.8_env/bin/clairvoyance.py
/Users/jespinoz/anaconda3/envs/soothsayer_py3.8_env/bin/run_soothsayer.py
/Users/jespinoz/anaconda3/envs/soothsayer_py3.8_env/lib/python3.8/site-packages/
Would not remove (might be manually added):
/Users/jespinoz/anaconda3/envs/soothsayer_py3.8_env/lib/python3.8/site-packages/soothsayer-2020.5.1.dist-info/Icon
这里是setup.py：
import re, datetime
from setuptools import setup, find_packages
# Version
version = None
with open("./soothsayer/__init__.py", "r") as f:
for line in f.readlines():
line = line.strip()
if line.startswith("__version__"):
version = line.split("=")[-1].strip().strip('"')
assert version is not None, "Check version in soothsayer/__init__.py"
setup(name='soothsayer',
version=version,
description='High-level API for (bio-)informatics',
url='https://github.com/jolespin/soothsayer',
author='Josh L. Espinoza',
author_email='[email protected]',
license='BSD-3',
packages=find_packages(include=("*", "./*")),
install_requires=[
"matplotlib >= 2.2.2",
"scipy >= 1.0",
"scikit-learn >= 0.20.2",
"numpy >= 1.13", #, < 1.14.0",
'pandas >= 1.0',
'networkx >= 2.0',
'ete3 >= 3.0',
'scikit-bio >= 0.5.1',
"biopython >= 1.5",
"xarray >= 0.10.3",
"tqdm >=4.19",
"openpyxl >= 2.5",
# "astropy >= 3.0",
"rpy2 >= 2.9.4, < 3.0",
"matplotlib_venn",
"palettable >= 3.0.0",
"adjustText",
"tzlocal",
"statsmodels >= 0.10.0", #https://github.com/statsmodels/statsmodels/issues/5899 May need to use this separately: pip install git+https://github.com/statsmodels/statsmodels.git@maintenance/0.10.x
"teneto",
"mmh3",
"soothsayer_utils >= 2020.4.30",
],
include_package_data=True,
scripts=['bin/clairvoyance.py', "bin/run_soothsayer.py"],
)
这里是我的manifest.in：
recursive-include soothsayer/io/data_type/ *.py
recursive-include soothsayer/feature_extraction/algorithms/ *.py
recursive-include soothsayer/r_wrappers/packages/ *.py
recursive-include soothsayer/tests/data/ *.py
recursive-include soothsayer/db/ *.pbz2
recursive-exclude releases/ *.tar.gz
global-exclude *.py[cod] __pycache__
这是我的pip版本：
pip 20.1 from /Users/jespinoz/anaconda3/envs/soothsayer_py3.8_env/lib/python3.8/site-packages/pip (python 3.8)
我似乎无法弄清楚？有谁知道是什么引起了这个问题？
我假定PyPI页面和导致问题的项目的源代码存储库如下：
在源代码存储库的根目录中有一个名称包含不寻常字符的文件。有时看起来像'Icon'$'\r'。该文件似乎也存在于source distribution for soothsayer 2020.5.4目录的soothsayer.egg-info中。因此，当pip安装该发行版时，它会以某种方式使正在安装的文件产生奇怪的记录：
$ pip show --files soothsayer
Name: soothsayer
Version: 2020.5.4
Summary: High-level package for (bio-)informatics
Home-page: https://github.com/jolespin/soothsayer
Author: Josh L. Espinoza
Author-email: [email protected]
License: BSD-3
Location: /tmp/tmp.YDoTgEDb9A/.venv/lib/python3.6/site-packages
Requires: networkx, teneto, palettable, matplotlib-venn, rpy2, xarray, ete3, biopython, tqdm, pandas, scikit-learn, scipy, numpy, scikit-bio, openpyxl, mmh3, matplotlib, statsmodels, adjustText, soothsayer-utils, tzlocal
Required-by:
Files:
"
"soothsayer-2020.5.4.dist-info/Icon
.
../../../bin/__pycache__/clairvoyance.cpython-36.pyc
../../../bin/__pycache__/run_soothsayer.cpython-36.pyc
../../../bin/clairvoyance.py
../../../bin/run_soothsayer.py
soothsayer-2020.5.4.dist-info/INSTALLER
soothsayer-2020.5.4.dist-info/Icon
soothsayer-2020.5.4.dist-info/METADATA
soothsayer-2020.5.4.dist-info/RECORD
soothsayer-2020.5.4.dist-info/WHEEL
soothsayer-2020.5.4.dist-info/top_level.txt
soothsayer/__init__.py
在上面，请注意首先记录的3个Files。这些记录显然是错误的。特别是第三行可能会导致pip意图删除site-packages目录。
我建议该[[soothsayer项目的所有者应：
更新
[进一步检查后，似乎在源代码存储库的每个目录中都有一个类似的名为Icon的文件，这些文件很可能也需要消失（除了该存储库中的许多其他异常内容之外， ）。