我正在尝试使用新名称重命名许多文件和文件夹。
示例旧名称:corrected_original_wh_ah108090.pdf
示例新名称:corrected_original_gsmp01358_108090.pdf
示例旧路径:Data/Test2/ARGOS/wh_ah108090/crawl/corrected_original_wh_ah108090.pdf
示例新路径:Data/Test2/ARGOS/gsmp01358_108090/crawl/corrected_original_gsmp01358_108090.pdf
示例元数据:
old new
wh_ah108090 gsmp01358_108090
wh_ah108091 gsmp01359_108091
wh_ah108092 gsmp01360_108092
wh_ah108093 gsmp01361_108093
wh_ah108096 gsmp01362_108096
wh_ah108102 gsmp01363_108102
wh_ah108106 gsmp01364_108106
代码:
# Read metadata for ID's #
meta <- read.csv('Metadata.csv')
# list all file paths
pathLs <- list.files('Data/Test2/', recursive = TRUE, full.names = TRUE)
# select only files with old format on the list (for full dataset where some files already have new name)
tbl<- pathLs [!grepl("gsmp", pathLs )]
# select only files with old format on metadata
metadata<- meta[!meta$old =="",]
# function to change old names for new
fileList <- apply(metadata,1,
function(x) {
fnam <- x['old']
fnam <- as.character(unlist(fnam))
newnam <- gsub(fnam, as.character(unlist(x['new'])), tbl[grepl(fnam, tbl)])
return(newnam)})
# Create dataframe with old and new names
to <- as.character(unlist(fileList))
from <- tbl
# Use rename
file.rename(from, to)
出于某种原因,此文件重命名无法正常工作。这是因为我无法同时重命名路径中的文件和目录吗?
不需要循环。
metadata <- read.table(header=T, stringsAsFactors=F, text="
old new
wh_ah108090 gsmp01358_108090
wh_ah108091 gsmp01359_108091
wh_ah108092 gsmp01360_108092
wh_ah108093 gsmp01361_108093
wh_ah108096 gsmp01362_108096
wh_ah108102 gsmp01363_108102
wh_ah108106 gsmp01364_108106")
metadata$new2 <- sprintf("gsmp%05d_%s",
1357L + seq_len(nrow(metadata)), # 1357 can be anything?
gsub("\\D", "", metadata$old))
metadata
# old new new2
# 1 wh_ah108090 gsmp01358_108090 gsmp01358_108090
# 2 wh_ah108091 gsmp01359_108091 gsmp01359_108091
# 3 wh_ah108092 gsmp01360_108092 gsmp01360_108092
# 4 wh_ah108093 gsmp01361_108093 gsmp01361_108093
# 5 wh_ah108096 gsmp01362_108096 gsmp01362_108096
# 6 wh_ah108102 gsmp01363_108102 gsmp01363_108102
# 7 wh_ah108106 gsmp01364_108106 gsmp01364_108106
file.rename(metadata$old, metadata$new2) # should do it
list.files
不列出任何目录名称,因此您的代码仅重命名文件,而不重命名目录。因此,理论上您的代码应该可以工作。具体来说,代码的哪一部分不起作用?