由于mathjax包导致Conda环境创建失败

Question

我正在尝试从此 YAML 创建 Conda 环境：

channels:
- bioconda
- conda-forge
- defaults
dependencies:
- fastqc=0.12.1
- multiqc=1.21

根据 Conda 的说法，这些软件包将被安装（我只粘贴第一行，这样你就可以看到 mathjax 是唯一没有缓存的）：

  Package                        Version  Build            Channel           Size
───────────────────────────────────────────────────────────────────────────────────
  Install:
───────────────────────────────────────────────────────────────────────────────────

  + ld_impl_linux-64                2.38  h1181459_1       pkgs/main       Cached
  + ca-certificates            2024.3.11  h06a4308_0       pkgs/main       Cached
  + libstdcxx-ng                  11.2.0  h1234567_1       pkgs/main       Cached
  + _libgcc_mutex                    0.1  main             pkgs/main       Cached
  + mathjax                        2.7.5  h06a4308_0       pkgs/main         18MB
  + blas                             1.0  openblas         pkgs/main       Cached
  + libgfortran5                  11.2.0  h1234567_1       pkgs/main       Cached

然后，这种情况不断发生：

mathjax                                             18.0MB @  82.2MB/s  0.2s
[+] 3m:18.9s
Downloading      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━  18.0MB /  18.0MB                               0.2s
Extracting  (13) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╸━━━━━━━━━━━━━━━━      50 /      63 openjdk                   3m:19.2s
error    libmamba Error when extracting package: Can't create 'lib/python3.11/site-packages/plotly/validators/icicle/legendgrouptitle/__pycache__/
_text.cpython-311.pyc'
error    libmamba Error when extracting package: filesystem error: cannot create directories: Disk quota exceeded [/home/salias/miniconda3/pkgs/co
ntourpy-1.2.0-py311hdb19cb5_0]
error    libmamba Error when extracting package: filesystem error: cannot create directories: Disk quota exceeded [/home/salias/miniconda3/pkgs/ri
ch-13.3.5-py311h06a4308_0]
plotly-5.19.0-py311h92b7b1e_0.conda extraction failed                                                                                             
contourpy-1.2.0-py311hdb19cb5_0.conda extraction failed
rich-13.3.5-py311h06a4308_0.conda extraction failed
openjdk-11.0.13-h87a67e3_0.conda extraction failed
[+] 3m:22.4s
Downloading      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━  18.0MB /  18.0MB                               0.2s
Extracting   (5) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╸━━━━━━━      58 /      63 mathjax                   3m:22.7s
error    libmamba Error when extracting package: Can't create 'site-packages/fontTools/ttLib/tables/S__i_l_l.py'
error    libmamba Error when extracting package: filesystem error: cannot create directories: Disk quota exceeded [/home/salias/miniconda3/pkgs/py
thon-dateutil-2.8.2-pyhd3eb1b0_0]
error    libmamba Error when extracting package: filesystem error: cannot create directories: Disk quota exceeded [/home/salias/miniconda3/pkgs/re
quests-2.31.0-py311h06a4308_1]
error    libmamba Error when extracting package: filesystem error: cannot create directories: Disk quota exceeded [/home/salias/miniconda3/pkgs/ma
tplotlib-base-3.8.0-py311ha02d727_0]
fonttools-4.25.0-pyhd3eb1b0_0.conda extraction failed                                                                                             python-dateutil-2.8.2-pyhd3eb1b0_0.conda extraction failed
requests-2.31.0-py311h06a4308_1.conda extraction failed
matplotlib-base-3.8.0-py311ha02d727_0.conda extraction failed
mathjax-2.7.5-h06a4308_0.conda extraction failed

有人知道这里发生了什么吗？我觉得很奇怪，这个错误似乎与磁盘空间有关（尽管我只想要 FastQC 和 MultiQC），但如果我尝试创建一个非常大的 Conda 环境（如 QIIME2），它就可以正常工作。为了以防万一它有用，我正在 Linux 集群的登录计算机中创建环境。

Answer 1

线路

error    libmamba Error when extracting package: filesystem error: cannot create directories: Disk quota exceeded [/home/salias/miniconda3/pkgs/co
ntourpy-1.2.0-py311hdb19cb5_0]

表明您超出了磁盘配额。也就是说，您已使用了允许的所有磁盘空间，因此无法提取更多所需的包。 Et 与 MathJax 具体无关，虽然 MathJax 是您提供的文本底部列出的最后一个文件，但它上面的其他三个包也无法安装。